Cancer genomics and proteomics : methods and protocols / edited by Narendra Wajapeyee.

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Includes bibliographical references and index.

1. Genome-Wide Mapping Of RNA Pol-II Promoter Usage In Mouse Tissues -- 2. Using Native Chromatin Immunoprecipitation To Interrogate Histone Variant Protein Deposition In Embryonic Stem Cells -- 3. Reduced Representation Bisulfite Sequencing To Identify Global Alteration In The DNA Methylation-- 4. A High-Throughput Microrna Expression Profiling System -- 5. Using Pooled Mir30-Shrna Library For Cancer Lethal And Synthetic Lethal Screens --6. Genome-Wide RNA Interference Screening To Identify Regulators Of Epigenetic Silencing Of A Tumor Suppressor Gene -- 7. A Diphtheria Toxin Negative Selection In RNA Interference Screening -- 8. Cancer Metabolism: Crosstalk Between Signaling And O-Glcnacylation -- 9. Targeted Genome Modification Via Triple Helix Formation -- 10. Synthesis Of Stabilized Alpha-Helical Peptides -- 11. Arginine-Grafted Biodegradable Polymer: A Versatile Transfection Reagent For Both DNA And Sirna -- 12. Using Laco Arrays To Monitor DNA Double-Strand Break Dynamics In Live Schizosaccharomyces Pombe Cells -- 13. Zebrafish As A Platform To Study Tumor Progression --14. Clonal Screens To Find Modifiers Of Partially Penetrant Phenotypes In C. Elegans --15. Serum Profiling Using Protein Microarrays To Identify Disease Related Antigens. -- 16. Interrogation Of In Vivo Protein-Protein Interactions Using Transgenic Mouse Models And Stable Isotope Labeling -- 17. New Biophysical Methods To Study The Membrane Activity Of Bcl-2 Proteins -- 18. Purification Of Recombinant 2XMBP Tagged Human Proteins From Human Cells -- 19. Computational Analysis In Cancer Exome Sequencing-- 20. Matrix Factorization Methods For Integrative Cancer Genomics -- 21. Computational Methods For DNA Copy-Number Analysis Of Tumors .